Browsing by Author "Pertierra, Luis R."

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    Comparative Genomics Supports Ecologically Induced Selection as a Putative Driver of Banded Penguin Diversification
    (2024) Leon, Fabiola; Pizarro, Eduardo; Noll, Daly; Pertierra, Luis R.; Parker, Patricia; Espinaze, Marcela P. A.; Luna-Jorquera, Guillermo; Simeone, Alejandro; Frere, Esteban; Dantas, Gisele P. M.; Cristofari, Robin; Cornejo, Omar E.; Bowie, Rauri C. K.; Vianna, Juliana A.
    The relative importance of genetic drift and local adaptation in facilitating speciation remains unclear. This is particularly true for seabirds, which can disperse over large geographic distances, providing opportunities for intermittent gene flow among distant colonies that span the temperature and salinity gradients of the oceans. Here, we delve into the genomic basis of adaptation and speciation of banded penguins, Gal & aacute;pagos (Spheniscus mendiculus), Humboldt (Spheniscus humboldti), Magellanic (Spheniscus magellanicus), and African penguins (Spheniscus demersus), by analyzing 114 genomes from the main 16 breeding colonies. We aim to identify the molecular mechanism and genomic adaptive traits that have facilitated their diversifications. Through positive selection and gene family expansion analyses, we identified candidate genes that may be related to reproductive isolation processes mediated by ecological thermal niche divergence. We recover signals of positive selection on key loci associated with spermatogenesis, especially during the recent peripatric divergence of the Gal & aacute;pagos penguin from the Humboldt penguin. High temperatures in tropical habitats may have favored selection on loci associated with spermatogenesis to maintain sperm viability, leading to reproductive isolation among young species. Our results suggest that genome-wide selection on loci associated with molecular pathways that underpin thermoregulation, osmoregulation, hypoxia, and social behavior appears to have been crucial in local adaptation of banded penguins. Overall, these results contribute to our understanding of how the complexity of biotic, but especially abiotic, factors, along with the high dispersal capabilities of these marine species, may promote both neutral and adaptive lineage divergence even in the presence of gene flow.
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    Cryptic speciation in gentoo penguins is driven by geographic isolation and regional marine conditions: Unforeseen vulnerabilities to global change
    (2020) Pertierra, Luis R.; Segovia, Nicolás I.; Noll, Daly; Martínez, Pablo A.; Pliscoff, Patricio; Barbosa, Andrés; Vianna, Juliana; Aragón, Pedro; Raya Rey, Andrea; Pistorius, Pierre; Trathan, Phil; Polanowski, Andrea; Bonadonna, Francesco; Le Bohec, Célin; Bi, Ke; Wang-Claypool, Cynthia Y.; González Acuña, Daniel; Dantas, Gisele P. M.; Bowie, Rauri C. K.; Poulin, Elie
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    History of Diversification and Adaptation from North to South Revealed by Genomic Data: Guanacos from the Desert to Sub-Antarctica
    (2024) Leon, Fabiola; Pizarro, Eduardo J.; Noll, Daly; Pertierra, Luis R.; Gonzalez, Benito A.; Johnson, Warren E.; Marin, Juan Carlos; Vianna, Juliana A.
    The increased availability of quality genomic data has greatly improved the scope and resolution of our understanding of the recent evolutionary history of wild species adapted to extreme environments and their susceptibility to anthropogenic impacts. The guanaco (Lama guanicoe), the largest wild ungulate in South America, is a good example. The guanaco is well adapted to a wide range of habitats, including the Sechura Desert, the high Andes Mountains to the north, and the extreme temperatures and conditions of Navarino Island to the south. Guanacos also have a long history of overexploitation by humans. To assess the evolutionary impact of these challenging habitats on the genomic diversity, we analyzed 38 genomes (similar to 10 to 16x) throughout their extensive latitudinal distribution from the Sechura and Atacama Desert to southward into Tierra del Fuego Island. These included analyses of patterns of unique differentiation in the north and geographic region further south with admixture among L. g. cacsilensis and L. g. guanicoe. Our findings provide new insights on the divergence of the subspecies similar to 800,000 yr BP and document two divergent demographic trajectories and to the initial expansion of guanaco into the more southern portions of the Atacama Desert. Patagonian guanacos have experienced contemporary reductions in effective population sizes, likely the consequence of anthropogenic impacts. The lowest levels of genetic diversity corresponded to their northern and western limits of distribution and some varying degrees of genetic differentiation. Adaptive genomic diversity was strongly linked with environmental variables and was linked with colonization toward the south followed by adaptation.
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    Shifting Perspectives in Polar Research: Global Lessons on the Barriers and Drivers for Securing Academic Careers in Natural Sciences
    (2021) Figuerola, Blanca; Valiente, Nicolas; Barbosa, Andres; Brasier, Madeleine J.; Colominas-Ciuro, Roger; Convey, Peter; Liggett, Daniela; Fernandez-Martinez, Miguel Angel; Gonzalez, Sergi; Griffiths, Huw J.; Jawak, Shridhar D.; Merican, Faradina; Noll, Daly; Prudencio, Janire; Quaglio, Fernanda; Pertierra, Luis R.
    The polar regions provide valuable insights into the functioning of the Earth's regulating systems. Conducting field research in such harsh and remote environments requires strong international cooperation, extended planning horizons, sizable budgets and long-term investment. Consequently, polar research is particularly vulnerable to societal and economic pressures during periods of austerity. The global financial crisis of 2008, and the ensuing decade of economic slowdown, have already adversely affected polar research, and the current COVID-19 pandemic has added further pressure. In this article we present the outcomes of a community survey that aimed to assess the main barriers and success factors identified by academic researchers at all career stages in response to these global crises. The survey results indicate that the primary barriers faced by polar early and mid-career researchers (EMCRs) act at institutional level, while mitigating factors are developed at individual and group levels. Later career scientists report pressure toward taking early retirement as a means of institutions saving money, reducing both academic leadership and the often unrecognized but vital mentor roles that many play. Gender and social inequalities are also perceived as important barriers. Reorganization of institutional operations and more effective strategies for long-term capacity building and retaining of talent, along with reduction in non-research duties shouldered by EMCRs, would make important contributions toward ensuring continued vitality and innovation in the polar research community.
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    Southward migration of the zero-degree isotherm latitude over the Southern Ocean and the Antarctic Peninsula: Cryospheric, biotic and societal implications
    (2024) Gonzalez-Herrero, Sergi; Navarro, Francisco; Pertierra, Luis R.; Oliva, Marc; Dadic, Ruzica; Peck, Lloyd; Lehning, Michael
    The seasonal movement of the zero-degree isotherm across the Southern Ocean and Antarctic Peninsula drives major changes in the physical and biological processes around maritime Antarctica. These include spatial and temporal shifts in precipitation phase, snow accumulation and melt, thawing and freezing of the active layer of the permafrost, glacier mass balance variations, sea ice mass balance and changes in physiological processes of biodiversity. Here, we characterize the historical seasonal southward movement of the monthly near-surface zero-degree isotherm latitude (ZIL), and quantify the velocity of migration in the context of climate change using climate reanalyses and projections. From 1957 to 2020, the ZIL exhibited a significant southward shift of 16.8 km decade(-1) around Antarctica and of 23.8 km decade(-1) in the Antarctic Peninsula, substantially faster than the global mean velocity of temperature change of 4.2 km decade(-1), with only a small fraction being attributed to the Southern Annular Mode (SAM). CMIP6 models reproduce the trends observed from 1957 to 2014 and predict a further southward migration around Antarctica of 24 +/- 12 km decade(-1) and 50 +/- 19 km decade(-1) under the SSP2-4.5 and SSP5-8.5 scenarios, respectively.
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    TerrANTALife 1.0 Biodiversity data checklist of known Antarctic terrestrial and freshwater life forms
    (Springer, 2024) Pertierra, Luis R.; Varliero, Gilda; Barbosa, Andres; Biersma, Elisabeth M.; Convey, Peter; Chown, Steven L.; Cowan, Don; De Los Rios, Asuncion; Escribano-Alvarez, Pablo; Fontaneto, Diego; Fraser, Ceridwen; Harris, Mathew; Hughes, Kevin; Griffiths, Huw; le Roux, Peter; Liu, Xiaoyue P.; Lynch, Heather; Majewska, Roksana; Martinez, Pablo A.; Molina-Montenegro, Marco; Olalla-Tarraga, Miguel A.; Peck, Lloyd; Quesada, Antonio; Ronquillo, Cristina; Ropert-Coudert, Yan; Sancho, Leopoldo; Terauds, Aleks; Vianna, Juliana; Wilmotte, Annick; Hortal, Joaquin; Greve, Michelle; CEDEUS (Chile)
    Background Incomplete species inventories for Antarctica represent a key challenge for comprehensive ecological research and conservation in the region. Additionally, data required to understand population dynamics, rates of evolution, spatial ranges, functional traits, physiological tolerances and species interactions, all of which are fundamental to disentangle the different functional elements of Antarctic biodiversity, are mostly missing. However, much of the fauna, flora and microbiota in the emerged ice -free land of the continent have an uncertain presence and/or unresolved status, with entire biodiversity compendia of prokaryotic groups (e.g. bacteria) being missing. All the available biodiversity information requires consolidation, cross -validation, re -assessment and steady systematic inclusion in order to create a robust catalogue of biodiversity for the continent. New information We compiled, completed and revised eukaryotic species inventories present in terrestrial and freshwater ecosystems in Antarctica in a new living database: terrANTALife (version 1.0). The database includes the first integration in a compendium for many groups of eukaryotic microorganisms. We also introduce a first catalogue of amplicon sequence variants (ASVs) of prokaryotic biodiversity. Available compendia and literature to date were searched for Antarctic terrestrial and freshwater species, integrated, taxonomically harmonised and curated by experts to create comprehensive checklists of Antarctic organisms. The final inventories comprises 470 animal species (including vertebrates, freeliving invertebrates and parasites), 306 plants (including all Viridiplantae: embryophytes and green algae), 997 fungal species and 434 protists (sensu lato). We also provide a first account for many groups of microorganisms, including non-lichenised fungi and multiple groups of eukaryotic unicellular species (Stramenophila, Alveolata and Rhizaria (SAR), Chromists and Amoeba), jointly referred to as "protists". In addition, we identify 1753 bacterial (obtained from 348117 ASVs) and 34 archaeal genera (from 1848 ASVs), as well as, at least, 14 virus families. We formulate a basic tree of life in Antarctica with the main lineages listed in the region and their "known-accepted-species" numbers.