Browsing by Author "Feytmans, E."

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    Scoring functions for protein structure prediction
    (2008) Melo Ledermann, Francisco Javier; Feytmans, E.; Schwede, Torsten; Peitsch, Manuel
    The following sections are included: Introduction Structure and Components of Scoring Functions Contact Scoring Functions Distance-dependent Scoring Functions Accessible Surface Scoring Functions Combined Scoring Functions How is a Scoring Function Derived? Selection of Source Experimental Data Reference Systems How is a Scoring Function Used? Classical Overall Score Calculation Sequence space reference frame Structure space reference frame Classical Detailed Score Calculation Variations on Score Calculations Typical Applications of Scoring Functions in Protein Structure Prediction Fold Assessment Model Ranking Error Detection Folding and Molecular Simulations Other Applications of Scoring Functions Future Outlook Reference Systems and Atom Type Definitions Solvation Models Evolutionary Information Multivariate Scoring Functions Acknowledgements References