Browsing by Author "Diez, Beatriz"

Now showing 1 - 17 of 17
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    A general theory for temperature dependence in biology
    (2022) Arroyoa, Jose Ignacio; Diez, Beatriz; Kempes, Christopher P.; West, Geoffrey B.; Marquet, Pablo A.
    At present, there is no simple, first principles-based, and general model for quantitatively describing the full range of observed biological temperature responses. Here we derive a general theory for temperature dependence in biology based on Eyring-EvansPolanyi's theory for chemical reaction rates. Assuming only that the conformational entropy of molecules changes with temperature, we derive a theory for the temperature dependence of enzyme reaction rates which takes the form of an exponential function modified by a power law and that describes the characteristic asymmetric curved temperature response. Based on a few additional principles, our model can be used to predict the temperature response above the enzyme level, thus spanning quantum to classical scales. Our theory provides an analytical description for the shape of temperature response curves and demonstrates its generality by showing the convergence of all temperature dependence responses onto universal relationships-a universal data collapse-under appropriate normalization and by identifying a general optimal temperature, around 25.C, characterizing all temperature response curves. The model provides a good fit to empirical data for a wide variety of biological rates, times, and steady-state quantities, from molecular to ecological scales and across multiple taxonomic groups (from viruses to mammals). This theory provides a simple framework to understand and predict the impact of temperature on biological quantities based on the first principles of thermodynamics, bridging quantum to classical scales.
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    Active Crossfire Between Cyanobacteria and Cyanophages in Phototrophic Mat Communities Within Hot Springs
    (2018) Guajardo-Leiva, Sergio; Pedros-Alio, Carlos; Salgado, Oscar; Pinto, Fabian; Diez, Beatriz
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    Adaptation strategies of giant viruses to low-temperature marine ecosystems
    (2024) Buscaglia, Marianne; Iriarte, Jose Luis; Schulz, Frederik; Diez, Beatriz
    Microbes in marine ecosystems have evolved their gene content to thrive successfully in the cold. Although this process has been reasonably well studied in bacteria and selected eukaryotes, less is known about the impact of cold environments on the genomes of viruses that infect eukaryotes. Here, we analyzed cold adaptations in giant viruses ( Nucleocytoviricota and Mirusviricota) from austral marine environments and compared them with their Arctic and temperate counterparts. We recovered giant virus metagenomeassembled genomes (98 Nucleocytoviricota and 12 Mirusviricota MAGs) from 61 newly sequenced metagenomes and metaviromes from sub-Antarctic Patagonian fjords and Antarctic seawater samples. When analyzing our data set alongside Antarctic and Arctic giant viruses MAGs already deposited in the Global Ocean Eukaryotic Viral database, we found that Antarctic and Arctic giant viruses predominantly inhabit sub-10 degrees C environments, featuring a high proportion of unique phylotypes in each ecosystem. In contrast, giant viruses in Patagonian fjords were subject to broader temperature ranges and showed a lower degree of endemicity. However, despite differences in their distribution, giant viruses inhabiting low-temperature marine ecosystems evolved genomic cold-adaptation strategies that led to changes in genetic functions and amino acid frequencies that ultimately affect both gene content and protein structure. Such changes seem to be absent in their mesophilic counterparts. The uniqueness of these cold-adapted marine giant viruses may now be threatened by climate change, leading to a potential reduction in their biodiversity.
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    Antarctic Polyester Hydrolases Degrade Aliphatic and Aromatic Polyesters at Moderate Temperatures
    (2022) Blazquez-Sanchez, Paula; Engelberger, Felipe; Cifuentes-Anticevic, Jeronimo; Sonnendecker, Christian; Grinen, Aransa; Reyes, Javiera; Diez, Beatriz; Guixe, Victoria; Richter, P. Konstantin; Zimmermann, Wolfgang; Ramirez-Sarmiento, Cesar A.
    Polyethylene terephthalate (PET) is one of the most widely used synthetic plastics in the packaging industry, and consequently has become one of the main components of plastic waste found in the environment. However, several microorganisms have been described to encode enzymes that catalyze the depolymerization of PET. While most known PET hydrolases are thermophilic and require reaction temperatures between 60 degrees C and 70 degrees C for an efficient hydrolysis of PET, a partial hydrolysis of amorphous PET at lower temperatures by the polyester hydrolase IsPETase from the mesophilic bacterium Ideonella sakaiensis has also been reported. We show that polyester hydrolases from the Antarctic bacteria Moraxella sp. strain TA144 (Mors1) and Oleispira antarctica RB-8 (OaCut) were able to hydrolyze the aliphatic polyester polycaprolactone as well as the aromatic polyester PET at a reaction temperature of 25 degrees C. Mors1 caused a weight loss of amorphous PET films and thus constitutes a PET-degrading psychrophilic enzyme. Comparative modeling of Mors1 showed that the amino acid composition of its active site resembled both thermophilic and mesophilic PET hydrolases. Lastly, bioinformatic analysis of Antarctic metagenomic samples demonstrated that members of the Moraxellaceae family carry candidate genes coding for further potential psychrophilic PET hydrolases.
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    Characterization and genomic analysis of two novel psychrotolerant Acidithiobacillus ferrooxidans strains from polar and subpolar environments
    (2022) Munoz-Villagran, Claudia; Grossolli-Galvez, Jonnathan; Acevedo-Arbunic, Javiera; Valenzuela, Ximena; Ferrer, Alonso; Diez, Beatriz; Levican, Gloria
    The bioleaching process is carried out by aerobic acidophilic iron-oxidizing bacteria that are mainly mesophilic or moderately thermophilic. However, many mining sites are located in areas where the mean temperature is lower than the optimal growth temperature of these microorganisms. In this work, we report the obtaining and characterization of two psychrotolerant bioleaching bacterial strains from low-temperature sites that included an abandoned mine site in Chilean Patagonia (PG05) and an acid rock drainage in Marian Cove, King George Island in Antarctic (MC2.2). The PG05 and MC2.2 strains showed significant iron-oxidation activity and grew optimally at 20 degrees C. Genome sequence analyses showed chromosomes of 2.76 and 2.84 Mbp for PG05 and MC2.2, respectively, and an average nucleotide identity estimation indicated that both strains clustered with the acidophilic iron-oxidizing bacterium Acidithiobacillus ferrooxidans. The Patagonian PG05 strain had a high content of genes coding for tolerance to metals such as lead, zinc, and copper. Concordantly, electron microscopy revealed the intracellular presence of polyphosphate-like granules, likely involved in tolerance to metals and other stress conditions. The Antarctic MC2.2 strain showed a high dosage of genes for mercury resistance and low temperature adaptation. This report of cold-adapted cultures of the At. ferrooxidans species opens novel perspectives to satisfy the current challenges of the metal bioleaching industry.
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    Coastal Bacterial Community Response to Glacier Melting in the Western Antarctic Peninsula
    (2021) Alcaman-Arias, Maria Estrella; Fuentes-Alburquenque, Sebastian; Vergara-Barros, Pablo; Cifuentes-Anticevic, Jeronimo; Verdugo, Josefa; Polz, Martin; Farias, Laura; Pedros-Alio, Carlos; Diez, Beatriz
    Current warming in the Western Antarctic Peninsula (WAP) has multiple effects on the marine ecosystem, modifying the trophic web and the nutrient regime. In this study, the effect of decreased surface salinity on the marine microbial community as a consequence of freshening from nearby glaciers was investigated in Chile Bay, Greenwich Island, WAP. In the summer of 2016, samples were collected from glacier ice and transects along the bay for 16S rRNA gene sequencing, while in situ dilution experiments were conducted and analyzed using 16S rRNA gene sequencing and metatranscriptomic analysis. The results reveal that certain common seawater genera, such as Polaribacter, Pseudoalteromonas and HTCC2207, responded positively to decreased salinity in both the bay transect and experiments. The relative abundance of these bacteria slightly decreased, but their functional activity was maintained and increased the over time in the dilution experiments. However, while ice bacteria, such as Flavobacterium and Polaromonas, tolerated the increased salinity after mixing with seawater, their gene expression decreased considerably. We suggest that these bacterial taxa could be defined as sentinels of freshening events in the Antarctic coastal system. Furthermore, these results suggest that a significant portion of the microbial community is resilient and can adapt to disturbances, such as freshening due to the warming effect of climate change in Antarctica.
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    Dark Diazotrophy during the Late Summer in Surface Waters of Chile Bay, West Antarctic Peninsula
    (2022) Alcaman-Arias, Maria E.; Cifuentes-Anticevic, Jeronimo; Castillo-Inaipil, Wilson; Farias, Laura; Sanhueza, Cynthia; Fernandez-Gomez, Beatriz; Verdugo, Josefa; Abarzua, Leslie; Ridley, Christina; Tamayo-Leiva, Javier; Diez, Beatriz
    Although crucial for the addition of new nitrogen in marine ecosystems, dinitrogen (N-2) fixation remains an understudied process, especially under dark conditions and in polar coastal areas, such as the West Antarctic Peninsula (WAP). New measurements of light and dark N-2 fixation rates in parallel with carbon (C) fixation rates, as well as analysis of the genetic marker nifH for diazotrophic organisms, were conducted during the late summer in the coastal waters of Chile Bay, South Shetland Islands, WAP. During six late summers (February 2013 to 2019), Chile Bay was characterized by high NO3- concentrations (similar to 20 mu M) and an NH4+ content that remained stable near 0.5 mu M. The N:P ratio was approximately 14.1, thus close to that of the Redfield ratio (16:1). The presence of Cluster I and Cluster III nifH gene sequences closely related to Alpha-, Delta- and, to a lesser extent, Gammaproteobacteria, suggests that chemosynthetic and heterotrophic bacteria are primarily responsible for N-2 fixation in the bay. Photosynthetic carbon assimilation ranged from 51.18 to 1471 nmol C L-1 d(-1), while dark chemosynthesis ranged from 9.24 to 805 nmol C L-1 d(-1). N2 fixation rates were higher under dark conditions (up to 45.40 nmol N L-1 d(-1)) than under light conditions (up to 7.70 nmol N L-1 d(-1)), possibly contributing more than 37% to new nitrogen-based production (>2.5 g N m(-2) y(-1)). Of all the environmental factors measured, only PO43--exhibited a significant correlation with C and N-2 rates, being negatively correlated (p < 0.05) with dark chemosynthesis and N-2 fixation under the light condition, revealing the importance of the N:P ratio for these processes in Chile Bay. This significant contribution of N-2 fixation expands the ubiquity and biological potential of these marine chemosynthetic diazotrophs. As such, this process should be considered along with the entire N cycle when further reviewing highly productive Antarctic coastal waters and the diazotrophic potential of the global marine ecosystem.
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    Diazotrophy in Alluvial Meadows of Subarctic River Systems
    (2013) DeLuca, Thomas H.; Zackrisson, Olle; Bergman, Ingela; Diez, Beatriz; Bergman, Birgitta
    There is currently limited understanding of the contribution of biological N-2 fixation (diazotrophy) to the N budget of large river systems. This natural source of N in boreal river systems may partially explain the sustained productivity of river floodplains in Northern Europe where winter fodder was harvested for centuries without fertilizer amendments. In much of the world, anthropogenic pollution and river regulation have nearly eliminated opportunities to study natural processes that shaped early nutrient dynamics of large river systems; however, pristine conditions in northern Fennoscandia allow for the retrospective evaluation of key biochemical processes of historical significance. We investigated biological N-2 fixation (diazotrophy) as a potential source of nitrogen fertility at 71 independent floodplain sites along 10 rivers and conducted seasonal and intensive analyses at a subset of these sites. Biological N-2 fixation occurred in all floodplains, averaged 24.5 kg N ha(-1) yr(-1) and was down regulated from over 60 kg N ha(-1) yr(-1) to 0 kg N ha(-1) yr(-1) by river N pollution. A diversity of N-2-fixing cyanobacteria was found to colonize surface detritus in the floodplains. The data provide evidence for N-2 fixation to be a fundamental source of new N that may have sustained fertility at alluvial sites along subarctic rivers. Such data may have implications for the interpretation of ancient agricultural development and the design of contemporary low-input agroecosystems.
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    Diversity and functionality of soil prokaryotic communities in antarctic volcanic soils: insights from penguin-influenced environments
    (2024) Segura, Diego; Jordaan, Karen; Diez, Beatriz; Tamayo-Leiva, Javier; Doetterl, Sebastian; Wasner, Daniel; Cifuentes-Anticevic, Jeronimo; Casanova-Katny, Angelica
    In the nutrient-limited Antarctic terrestrial habitat, penguins transfer a significant amount of nutrients from the marine to the terrestrial ecosystem through their depositions (i.e., guano). This guano influences soil physicochemical properties, leading to the formation of ornithogenic soil rich in nutrients and organic matter. We hypothesize that soil prokaryotic communities will be strongly influenced by the contribution of nitrogenous nutrients from penguin rookeries, maintaining the influence over long distances. The objective was to establish how the soil prokaryotic diversity and community structure change with distance from a penguin colony, which provides large amounts of guano and nitrogenous compounds, and to study the effects of these nutrients on the functional role of these communities. Methods include volcanic soil sampling along a 1200 m transect from the penguin active rookery and the characterization of soil nutrient content and soil prokaryotic communities using 16S rRNA high-throughput amplicon sequencing. In contrast to our hypothesis, the results showed that the impact of guano from the penguin colony was restricted to the first 300 m. Probably because the penguin rookery was sheltered, strong wind and wind direction did not affect the transport of nutrients from the penguin rookery. Areas close to the penguin rookery were dominated by Proteobacteria and Bacteroidetes, while areas situated further away were dominated by Acidobacteria, Actinobacteria, Chloroflexi, Gemmatimonadetes, Nitrospirae, and Planctomycetes. Beta diversity analysis among the soil prokaryotic communities revealed a high degree of community heterogeneity, strongly associated with N compound characteristics (NH4, NO3, and %N), C, and pH. Inferences from N metabolism genes suggest a high potential of the microbial community for dissimilatory nitrate reduction genes (DNRA) to ammonium, assimilatory nitrate reduction (ANR), and denitrification. Although it is assumed that the nitrogenous compounds of the penguin colonies reach long distances and affect the prokaryotic community, this effect can vary with wind directions or the morphology of the site, reducing the impact of the guano over long distances, as our results indicate. On the other hand, functional predictions give some clues about the main actors in nitrogen cycling, through processes like dissimilatory nitrate reduction, assimilatory nitrate reduction, and denitrification.
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    Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange
    (2023) Blazquez-Sanchez, Paula; Vargas, Jhon A.; Furtado, Adriano A.; Grinen, Aransa; Leonardo, Diego A.; Sculaccio, Susana A.; Pereira, Humberto D'Muniz; Sonnendecker, Christian; Zimmermann, Wolfgang; Diez, Beatriz; Garratt, Richard C.; Ramirez-Sarmiento, Cesar A.
    Several hydrolases have been described to degrade polyethylene terephthalate (PET) at moderate temperatures ranging from 25 degrees C to 40 degrees C. These mesophilic PET hydrolases (PETases) are less efficient in degrading this plastic polymer than their thermophilic homologs and have, therefore, been the subject of many protein engineering campaigns. However, enhancing their enzymatic activity through rational design or directed evolution poses a formidable challenge due to the need for exploring a large number of mutations. Additionally, evaluating the improvements in both activity and stability requires screening numerous variants, either individually or using high-throughput screening methods. Here, we utilize instead the design of chimeras as a protein engineering strategy to increase the activity and stability of Mors1, an Antarctic PETase active at 25 degrees C. First, we obtained the crystal structure of Mors1 at 1.6 A resolution, which we used as a scaffold for structure- and sequence-based chimeric design. Then, we designed a Mors1 chimera via loop exchange of a highly divergent active site loop from the thermophilic leaf-branch compost cutinase (LCC) into the equivalent region in Mors1. After restitution of an active site disulfide bond into this chimera, the enzyme exhibited a shift in optimal temperature for activity to 45 degrees C and an increase in fivefold in PET hydrolysis when compared with wild-type Mors1 at 25 degrees C. Our results serve as a proof of concept of the utility of chimeric design to further improve the activity and stability of PETases active at moderate temperatures.
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    Acidithiobacillia class members originating at sites within the Pacific Ring of Fire and other tectonically active locations and description of the novel genus 'Igneacidithiobacillus'
    (2024) Arisan, Dilanaz; Moya-Beltran, Ana; Rojas-Villalobos, Camila; Issotta, Francisco; Castro, Matias; Ulloa, Ricardo; Chiacchiarini, Patricia A.; Diez, Beatriz; Martin, Alberto J. M.; Nancucheo, Ivan; Giaveno, Alejandra; Johnson, D. Barrie; Quatrini, Raquel
    Recent studies have expanded the genomic contours of the Acidithiobacillia, highlighting important lacunae in our comprehension of the phylogenetic space occupied by certain lineages of the class. One such lineage is 'Igneacidithiobacillus', a novel genus-level taxon, represented by 'Igneacidithiobacillus copahuensis' VAN18-1(T) as its type species, along with two other uncultivated metagenome-assembled genomes (MAGs) originating from geothermally active sites across the Pacific Ring of Fire. In this study, we investigate the genetic and genomic diversity, and the distribution patterns of several uncharacterized Acidithiobacillia class strains and sequence clones, which are ascribed to the same 16S rRNA gene sequence clade. By digging deeper into this data and contributing to novel MAGs emerging from environmental studies in tectonically active locations, the description of this novel genus has been consolidated. Using state-of-the-art genomic taxonomy methods, we added to already recognized taxa, an additional four novel Candidate (Ca.) species, including 'Ca. Igneacidithiobacillus chanchocoensis' (mCHCt20-1(TS)), 'Igneacidithiobacillus siniensis' (S30A2(T)), 'Ca. Igneacidithiobacillus taupoensis' (TVZ-G3 (TS)), and 'Ca. Igneacidithiobacillus waiarikiensis' (TVZ-G4 (TS)). Analysis of published data on the isolation, enrichment, cultivation, and preliminary microbiological characterization of several of these unassigned or misassigned strains, along with the type species of the genus, plus the recoverable environmental data from metagenomic studies, allowed us to identify habitat preferences of these taxa. Commonalities and lineage-specific adaptations of the seven species of the genus were derived from pangenome analysis and comparative genomic metabolic reconstruction. The findings emerging from this study lay the groundwork for further research on the ecology, evolution, and biotechnological potential of the novel genus 'Igneacidithiobacillus'.
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    Influence of Estuarine Water on the Microbial Community Structure of Patagonian Fjords
    (2021) Tamayo-Leiva, Javier; Cifuentes-Anticevic, Jeronimo; Aparicio-Rizzo, Pilar; Arroyo, Jose Ignacio; Masotti, Italo; Diez, Beatriz
    Fjords are sensitive areas affected by climate change and can act as a natural laboratory to study microbial ecological processes. The Chilean Patagonian fjords (41-56 degrees S), belonging to the Subantarctic ecosystem (46-60 degrees S), make up one of the world's largest fjord systems. In this region, Estuarine Water (EW) strongly influences oceanographic conditions, generating sharp gradients of oxygen, salinity and nutrients, the effects of which on the microbial community structure are poorly understood. During the spring of 2017 we studied the ecological patterns (dispersal and oceanographic factors) underlying the microbial community distribution in a linear span of 450 km along the estuarine-influenced Chilean Patagonian fjords. Our results show that widespread microbial dispersion existed along the fjords where bacterioplankton exhibited dependence on the eukaryotic phytoplankton community composition. This dependence was particularly observed under the low chlorophyll-a conditions of the Baker Channel area, in which a significant relationship was revealed between SAR11 Clade III and the eukaryotic families Pyrenomonadaceae (Cryptophyte) and Coccomyxaceae (Chlorophyta). Furthermore, dissolved oxygen and salinity were revealed as the main drivers influencing the surface marine microbial communities in these fjords. A strong salinity gradient resulted in the segregation of the Baker Channel prokaryotic communities from the rest of the Patagonian fjords. Likewise, Microbacteriaceae, Burkholderiaceae and SAR11 Clade III, commonly found in freshwater, were strongly associated with EW conditions in these fjords. The direct effect of EW on the microbial community structure and diversity of the fjords exemplifies the significance that climate change and, in particular, deglaciation have on this marine region and its productivity.
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    Proteorhodopsin Phototrophy in Antarctic Coastal Waters
    (2021) Cifuentes-Anticevic, Jeronimo; Alcaman-Arias, Maria E.; Alarcon-Schumacher, Tomas; Tamayo-Leiva, Javier; Pedros-Alio, Carlos; Farias, Laura; Diez, Beatriz
    Microbial proton-pumping rhodopsins are considered the simplest strategy among phototrophs to conserve energy from light. Proteorhodopsins are the most studied rhodopsins thus far because of their ubiquitous presence in the ocean, except in Antarctica, where they remain understudied. We analyzed proteorhodopsin abundance and transcriptional activity in the Western Antarctic coastal seawaters. Combining quantitative PCR (qPCR) and metagenomics, the relative abundance of proteorhodopsin-bearing bacteria accounted on average for 17, 3.5, and 29.7% of the bacterial community in Chile Bay (South Shetland Islands) during 2014, 2016, and 2017 summer-autumn, respectively. The abundance of proteorhodopsin-bearing bacteria changed in relation to environmental conditions such as chlorophyll a and temperature. Alphaproteobacteria, Gammaproteobacteria, and Flavobacteriia were the main bacteria that transcribed the proteorhodopsin gene during day and night. Although green light-absorbing proteorhodopsin genes were more abundant than blue-absorbing ones, the latter were transcribed more intensely, resulting in .50% of the proteorhodopsin transcripts during the day and night. Flavobacteriia were the most abundant proteorhodopsin-bearing bacteria in the metagenomes; however, Alphaproteobacteria and Gammaproteobacteria were more represented in the metatranscriptomes, with qPCR quantification suggesting the dominance of the active SAR11 clade. Our results show that proteorhodopsin-bearing bacteria are prevalent in Antarctic coastal waters in late austral summer and early autumn, and their ecological relevance needs to be elucidated to better understand how sunlight energy is used in this marine ecosystem.
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    Seasonal and Spatially Distributed Viral Metagenomes from Comau Fjord (42°S), Patagonia
    (2023) Castro-Nallar, Eduardo; Berrios-Farias, Valentin; Diez, Beatriz; Guajardo-Leiva, Sergio
    Viruses are key players in marine environments, affecting food webs and biogeochemical cycles. We present 48 viral metagenomes and 5,656 viral operational taxonomic units (vOTUs) from Comau Fjord, Patagonia (42 degrees S), to understand viral-mediated processes in coastal and estuarine waters. These data represent a spatial (35-km transect, two depths) and seasonal (winter and fall) data set.
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    Surface Ammonia-Oxidizer Abundance During the Late Summer in the West Antarctic Coastal System
    (2022) Alcaman-Arias, Maria E.; Cifuentes-Anticevic, Jeronimo; Diez, Beatriz; Testa, Giovanni; Troncoso, Macarena; Bello, Estrella; Farias, Laura
    Marine ammonia oxidizers that oxidize ammonium to nitrite are abundant in polar waters, especially during the winter in the deeper mixed-layer of West Antarctic Peninsula (WAP) waters. However, the activity and abundance of ammonia-oxidizers during the summer in surface coastal Antarctic waters remain unclear. In this study, the ammonia-oxidation rates, abundance and identity of ammonia-oxidizing bacteria (AOB) and archaea (AOA) were evaluated in the marine surface layer (to 30 m depth) in Chile Bay (Greenwich Island, WAP) over three consecutive late-summer periods (2017, 2018, and 2019). Ammonia-oxidation rates of 68.31 nmol N L-1 day(-1) (2018) and 37.28 nmol N L-1 day(-1) (2019) were detected from illuminated 2 m seawater incubations. However, high ammonia-oxidation rates between 267.75 and 109.38 nmol N L-1 day(-1) were obtained under the dark condition at 30 m in 2018 and 2019, respectively. During the late-summer sampling periods both stratifying and mixing events occurring in the water column over short timescales (February-March). Metagenomic analysis of seven nitrogen cycle modules revealed the presence of ammonia-oxidizers, such as the Archaea Nitrosopumilus and the Bacteria Nitrosomonas and Nitrosospira, with AOA often being more abundant than AOB. However, quantification of specific amoA gene transcripts showed number of AOB being two orders of magnitude higher than AOA, with Nitrosomonas representing the most transcriptionally active AOB in the surface waters. Additionally, Candidatus Nitrosopelagicus and Nitrosopumilus, phylogenetically related to surface members of the NP-epsilon and NP-gamma clades respectively, were the predominant AOA. Our findings expand the known distribution of ammonium-oxidizers to the marine surface layer, exposing their potential ecological role in supporting the marine Antarctic system during the productive summer periods.
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    The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat
    (2015) Estrella Alcaman, Maria; Fernandez, Camila; Delgado, Antonio; Bergman, Birgitta; Diez, Beatriz
    Cyanobacteria from Subsection V (Stigonematales) are important components of microbial mats in non-acidic terrestrial hot springs. Despite their diazotrophic nature (N-2 fixers), their impact on the nitrogen cycle in such extreme ecosystems remains unknown. Here, we surveyed the identity and activity of diazotrophic cyanobacteria in the neutral hot spring of Porcelana (Northern Patagonia, Chile) during 2009 and 2011-2013. We used 16S rRNA and the nifH gene to analyze the distribution and diversity of diazotrophic cyanobacteria. Our results demonstrate the dominance of the heterocystous genus Mastigocladus (Stigonematales) along the entire temperature gradient of the hot spring (69-38 degrees C). In situ nitrogenase activity (acetylene reduction), nitrogen fixation rates (cellular uptake of N-15(2)) and nifH transcription levels in the microbial mats showed that nitrogen fixation and nifH mRNA expression were light-dependent. Nitrogen fixation activities were detected at temperatures ranging from 58 degrees C to 46 degrees C, with maximum daily rates of 600 nmol C2H4 cm(-2) per day and 94.1 nmol N cm(-2) per day. These activity patterns strongly suggest a heterocystous cyanobacterial origin and reveal a correlation between nitrogenase activity and nifH gene expression during diurnal cycles in thermal microbial mats. N and C fixation in the mats contributed similar to 3 g Nm(-2) per year and 27 g Cm-2 per year, suggesting that these vital demands are fully met by the diazotrophic and photoautotrophic capacities of the cyanobacteria in the Porcelana hot spring.
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    Vertically distinct sources modulate stable isotope signatures and distribution of Mesozooplankton in central Patagonia: The Golfo de Penas- Baker Channel connection and analogies with the Beagle Channel
    (2024) Castro, Leonardo R.; Soto-Mendoza, Samuel; Riccialdelli, Luciana; Presta, Maria L.; Barrientos, Pamela; Gonzalez, Humberto E.; Daneri, Giovanni; Gutierrez, Marcelo; Montero, Paulina; Masotti, Italo; Diez, Beatriz
    Using hydrographic and zooplankton sampling along with stable isotope analyses, we determined the influence of freshwater input and of oceanic water ingress at the Golfo de Penas to the Baker Channel (47 degrees S), central Patagonia, on the zooplankton community during mid-spring. Our results show that different taxonomic and functional groups occurred within the mesozooplankton community along an offshore-inshore-oriented transect. Some groups occurred mostly offshore (i.e. euphausiids, fish larvae, stomatopods, amphipods), while others occurred in higher abundance inshore (i.e. medusae, chaetognaths, siphonophores, ostracods). Early life stages of ecologically key species, such as Euphausia vallentini and pelagic stages of Munida gregaria, occurred mostly at the Golfo de Penas. Higher trophic positions estimated from delta 15N occurred in mesozooplankton groups inshore (Baker Channel) and lower at the Golfo de Penas, coinciding with the decrease in C:N ratio in zooplankton and with an increase in chlorophyll-a values in the seawater seawards. The delta 13C distribution in the zooplankton groups along the offshore-inshore transect showed a positive gradient from the inshore most stations towards the Baker Channel mouth, suggesting a negative relationship with freshwater carrying terrestrial organic carbon and a positive relationship with seawater. However, from the channel mouth seawards, a decrease in delta 13C in most zooplankton groups occurred. Within the Baker Channel, low delta 13C values occurred in particulate organic matter (POM) at the surface layer, higher values at intermediate depths, and low values at the deepest zones. This uneven distribution of delta 13C values in POM and zooplankton, along with the presence of different water masses at different depths suggest an along-basin transport of organic carbon of different sources at different layers: of terrestrial origin at surface, marine origin at mid depth, and from degraded organic matter from offshore entering at higher depths. Thus, a complex scenario of lateral transport of water of different characteristics modulates the presence of zooplankton in different locations and their food sources along the area. These findings resemble others observed in further south in the Beagle Channel (57 degrees S) also in spring but the relative contribution of different carbon sources may differ between Patagonian systems.